{"publication":{"abstract":null,"body":"::::::figure{#fig-1 align=\"center\" type=\"image\" label=\"Figure 1\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-01-53bf0175.png\"}\n:::::\n\n:::::figcaption\n**Figure 1.** \n:::::\n::::::\n\nKnown Etiology and Molecular Pathogenesis\n\n::::::figure{#fig-u2 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-02-ecd01eda.png\"}\n:::::\n::::::\n\nPipeline\n\n::::::figure{#fig-u3 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-03-1f44990d.png\"}\n:::::\n::::::\n\nSomatic SNV (MSK report)\n\n::::::figure{#fig-u4 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-04-fed8ca84.jpg\"}\n:::::\n::::::\n\nSomatic SNV (preliminary results)\n\n::::::figure{#fig-u5 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-05-ab56f4d2.jpg\"}\n:::::\n::::::\n\nCNV (MSK report)\n\n::::::figure{#fig-u6 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-06-6ed08bd6.jpg\"}\n:::::\n::::::\n\nDid not observe read depth changes at AXIN2 or KIT\n\n::::::figure{#fig-u7 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-07-c3324ea4.jpg\"}\n:::::\n::::::\n\nSomatic CNV: combine loss of heterozygosity (LOH) and read-depth changes\n\n::::::figure{#fig-u8 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-08-e2230b53.jpg\"}\n:::::\n::::::\n\nNo evidence for the duplications of AXIN2 or KIT in either LOH or Read Depth\n\n::::::figure{#fig-u9 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-09-25ee5760.jpg\"}\n:::::\n::::::\n\nChr20 trisomy + deletion\n\n::::::figure{#fig-u10 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-10-324d8bb3.jpg\"}\n:::::\n::::::\n\nPrevalent chromosome arm aneuploidy (CAA)\n\n::::::figure{#fig-u11 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-11-fad20aa8.jpg\"}\n:::::\n::::::\n\nCNV’s on known cancer driver genes\\*\n\n::::::figure{#fig-u12 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-12-305032b1.jpg\"}\n:::::\n::::::\n\nKARS duplication\n\n::::::figure{#fig-u13 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-13-d5f98f7d.jpg\"}\n:::::\n::::::\n\nGermline Predisposition Mutations\n\n::::::figure{#fig-u14 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-14-2cdae633.jpg\"}\n:::::\n::::::\n\nSomatic LI insertion in gene COMMDIO\n\n::::::figure{#fig-u15 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-15-b18c68fe.jpg\"}\n:::::\n::::::\n\nAtypical LI retrotransposition\n\n::::::figure{#fig-u16 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-16-285481aa.jpg\"}\n:::::\n::::::\n\nSummary - preliminary results\n\n::::::figure{#fig-u17 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-17-cbf97a25.jpg\"}\n:::::\n::::::\n\nPreliminary results for sharing\n\n::::::figure{#fig-u18 align=\"center\" type=\"image\"}\n:::::image{width=\"100%\" alt=\"\" src=\"/api/files/publications/genomic-re-analysis-desmoid-tumor/fig-18-8791ee34.jpg\"}\n:::::\n::::::\n","contributors":[{"user_id":162,"role":"Writing","first_name":"Journal","last_name":"Editor","avatar":"avatars/users/pubpub-25d11c06.jpg","in_byline":1,"priority":1,"affiliations":[{"org_id":87,"name":"Research to the People","slug":"research-to-the-people","ror_id":null,"avatar":null}]}],"created_at":"2026-10-18T12:00:00.000Z","doi":null,"version_doi":null,"feedback_form_embed_src":null,"id":48,"license":"CC BY","linked_assets":[],"orgs":[{"org_id_int":87,"priority":1,"slug":"research-to-the-people","name":"Research to the People","avatar":null}],"pdf_url":null,"publisher":"Research to the People","references":[],"slug":"genomic-re-analysis-desmoid-tumor","social_posts_count":null,"social_posts_embed_src":null,"state":"PUBLISHED","subtitle":null,"tags":[],"title":"Genomic Re-analysis of a Case with Desmoid Tumor","version_desc":null,"version_number":1,"versions":[{"id":48,"version_number":1,"version_desc":null,"doi":null,"created_at":"2026-10-18T12:00:00.000Z"}]}}